autofragment.algorithms

Modules

clustering

Clustering algorithms for molecular partitioning.

geometric

Geometric plane-based partitioning for molecular clusters.

graph_partition

Graph-based partitioning algorithms.

hungarian

Hungarian algorithm for optimal assignment.

ml_interface

Machine learning interface for fragmentation (Future).

optimizer

Fragmentation optimization algorithms.

scoring

Fragmentation scoring system.

seeding

Seeding strategies for k-means initialization.