autofragment.partitioners

Partitioner classes for molecular fragmentation.

Modules

base

Base class for partitioners.

batch

Batch partitioner for consistent labeling across multiple files.

bio

Biological system partitioner for mmCIF files.

geometric

Geometric partitioning for materials.

matsci

Materials science partitioner.

molecular

Molecular partitioner for water clusters and similar systems.

nucleic

Nucleic acid partitioner for DNA and RNA molecules.

qmmm

QM/MM partitioner for multi-level calculations.

spectral

Spectral partitioner with optional graph dependencies.

topology

Topology-based neighborhood selection utilities.